Population & Community Ecology part of CUREnet:CURE Collection
Cascade Sorte, University of California-Irvine
Students in a Population and Community Ecology class participate in coastal marine research focused on understanding factors determining population sizes and community interactions, particularly in the context of species that appear to be shifting their ranges with climate change. Students participate in all aspects of the research from making observations and collecting data in the field to defining questions, stating hypothesis, designing and completing statistical analysis, and interpreting and presenting results. The outcomes are a research proposal, research paper, and poster presentation. All are intended to be at a level appropriate for use as a writing sample or presentation at undergraduate conferences. Results are incorporated into the ongoing research project led by the course instructor and graduate student teaching assistant.

Biomass conversion into highly useful chemicals part of CUREnet:Institutes:Alabama State University:Examples
SAPNA JAIN, Alabama State University
This is CURE based course that aims at bridging the gap between theoretical knowledge in chemistry and its practical applications at solving real-world problems. It gives students an opportunity to construct and synthesize their knowledge and skills by learning to apply theoretical knowledge to practice by the laboratory research. The purpose of this course is to acquaint students with the fundamental concepts of chemistry, synthetic methods and techniques. The emphasis will be on novel catalysts synthesis and evaluating their activity towards biomass conversion to liquid fuel and useful chemicals. Students will design synthesize, deduce identities of the biomass conversion products from chemical and spectral clues, and predict reaction products.

Analyzing datasets in ecology and evolution to teach the nature and process of science part of CUREnet:CURE Collection
Rebecca Price, University of Washington-Tacoma Campus
This quarter-long project forms the basis of a third-year course for majors and nonmajors at the University of Washington, Bothell called Science Methods and Practice. Students use databases to identify novel research questions, and extract data to test their hypotheses. They frame the question with primary literature, address the questions with inferential statistics, and discuss the results with more primary literature. The product is a scientific paper; each step of the process is scaffolded and evaluated. Given time limitations, we avoid devoting time to data collection; instead, we sharpen students' ability to make sense of a large body of quantitative data, a situation they may rarely have encountered. We treat statistics with a strictly conceptual, pragmatic, and abbreviated approach; i.e., we ask students to know which basic test to choose to assess a linear relationship vs. a difference between two means. We stress the need for a normal distribution in order to use these tests, and how to interpret the results; we leave the rest for stats courses, and we do not teach the mathematics. This approach proves beneficial even to those who have already had a statistics course, because it is often the first time they make decisions about applying statistics to their own research questions. We incorporate peer review and collaborative work throughout the quarter. We form collaborative groups around the research questions they ask, enabling them to share primary literature they find, and preparing them well to review each other's writing. We encourage them to cite each other's work. They write formal peer reviews of each other's papers, and they submit their final paper with a letter-to-the-editor highlighting how their research has addressed previous feedback. A major advantage of this course is that an instructor can easily modify it to suit any area of expertise. Students have worked with data about how a snail's morphology changes in response to its environment (Price, 2012), how students understand genetic drift (Price et al. 2014), maximum body size in the fossil record (Payne et al. 2008), range shifts (Ettinger et al. 2011), and urban crop pollination (Waters and Clifford 2014).

Community Flood Risk Assessment from Rising/Surging Seas Project part of CUREnet:Institutes:Other Institutes (2019-2020):Examples
Kevin Kupietz, Elizabeth City State University
Globally 634 million people, 10% of the world's population, live in coastal areas less than 10 meters above sea level. According to 2010 census data, 123 million people, 39% of the United States population, live in coastal counties with an estimated increase to this number by 8% in the 2020 census. As natural disasters have been seen to increase in frequency and severity in the past five years coupled with expected sea rises from climate change it is important that anyone involved with the safety and resiliency planning of their organization/community have an understanding of how to scientifically assess risk from flooding in order to mitigate and recover from the effects. This project allows students the ability to develop skills to utilize computer modeling systems and to apply the data to real world communities in examining risk to structures as well as different groups in the community.

Global Change Microbiology part of CUREnet:CURE Collection
Luciana Santoferrara, Hofstra University
The dramatic impacts of human activities on Earth have catapulted the development of new disciplines across the sciences, humanities, and more. Studying the basis, challenges and responses to the global changes our planet and the human society face has become urgent. In the Global Change Microbiology CURE, students develop semester-long research projects focused on microbial communities and their relationship with a local environmental problem. Students: 1) develop research questions and conduct both field and wet lab work to estimate environmental, cell count and DNA-based diversity metrics; 2) receive training in bioinformatics, data analysis and result presentation; and 3) discuss literature on the interplay between microbes and environmental issues (e.g., global warming, ocean acidification, deoxygenation of coastal waters), the impacts of global changes on microbe-host interactions (e.g., coral bleaching, spreading of infectious diseases) and microbial applications (e.g., bioremediation, waste management). We examine key players in the whole spectrum of microorganisms (from viruses to microscopic animals), with emphasis on often overlooked protists that influence biogeochemical cycles, ecological functioning and host wellbeing.

Using NSF's NEON Data in an Undergraduate Ecology CURE on the Ecological Impacts of Global Climate Change part of CUREnet:CURE Collection
Jennifer Kovacs, Agnes Scott College
We live in a time where we can see a very real need for a basic understanding of ecological terminology, concepts, and methodologies to improve public policy and other ecological problem-solving decisions, especially in light of global climate change. Across the field, there is a major push to incorporate computational thinking and an understanding of human social systems throughout the science curriculum. In ecology and other STEMM fields, basic programming and coding skills have become essential and marketable, as has the ability to mine and analyze large data sets.In this semester-long CURE, students individually develop and answer their own ecological research question using a selection of publicly available datasets from the expansive NSF NEON data repository. Generally, at the beginning of the course the instructor selects several data products from a specific geographic region. After gaining familiarity with the NEON project through videos, a NEON data tutorial, and a case study, students also use these curated NEON data products to begin forming their independent research projects. Most students ultimately incorporate other data products either from NEON or other databases into their final research projects. Students use mostly R to download, wrangle, and analyze their data. The instructor assumes no prior knowledge of R or coding at the beginning of the course. Throughout the semester, students complete mini-assignments and tutorials which introduce them to the necessary coding skills to download, clean, analyze, and visualize their chosen data products. Additionally, students are provided with a wide range of free resources, including videos, tutorials, and the free online textbook Passion Driven Statistics to help them master the skills they need to complete their individual research projects. During weekly in-class one-on-one meetings with the instructor, students work to identify, collect, and analyze data that would address an existing hypothesis/ problem in the field of ecology and global climate change. Ultimately, students present their findings to the larger campus community during the annual undergraduate research day at our institution.

Genome Solver: Microbial Comparative Genomics part of CUREnet:CURE Collection
Gaurav Arora, Gallaudet University
Genome Solver began in 2011 as way to teach Bioinformatics tools to undergraduate faculty. As part of the Genome Solver project as a whole, we developed a Community Science Project (CSP) for faculty and students to join. The CSP explores horizontal gene transfer (HGT) between bacteria and the phages that infect them. Students get involved in this project and develop testable hypotheses about the role HGT between bacteria and phages play in microbial evolution. Our own work has demonstrated that undergraduates can produce publishable data using this approach. We invite faculty and their students to participate in the search for additional evidence of this type of HGT by investigating the vast wealth of phage and bacterial sequences currently in databases. All that is needed is a computer, an Internet connection, and enthusiasm for research. Faculty and students can work on an organism of interest or we can help them pick organisms to explore these phenomena. By pooling all of the information from a variety of small projects under the umbrella of the Genome Solver CSP, we will be able to better understand the role of HGT in bacterial evolution.

CREARE: Coral Response to Environment Authentic Research Experience part of CUREnet:CURE Collection
Juan Ramirez Lugo, University of Puerto Rico-Rio Piedras Campus
There is growing body of evidence to support that students who directly experience authentic scientific research are more likely to continue onto advanced degrees and careers in Science, Technology, Engineering and Mathematics (STEM). In an effort to introduce more students to the benefits of scientific research we have drawn on an ongoing research project aimed at understanding how Corals Respond to the Environment (CRE) to develop an interdisciplinary laboratory course based on Authentic Research Experiences (ARE). A small cohort of undergraduate students enrolled in a semester-long course, entitled CREARE, perform biochemical experiments in the laboratory, analyze environmental data by R statistical software and prepared a report modeled after a research manuscript to present their work. The impact of CREARE on student learning gains and attitudes towards science is being measured, as is the impact of CREARE on participants' career choices and retention in STEM. This multidisciplinary research program addresses the impact of climate change on the health of a critically endangered coral species, ultimately leading to a better stewardship of this invaluable resource. Furthermore, CREARE offers a unique experience for students, one that may serve as a model for the development of more research-based courses, leading to improved retention in our STEM departments.

Using Ocean Plastic Research to Increase Student Engagement and Persistence in Biology part of CUREnet:CURE Collection
Ana Maria Barral, National University
The Improving Undergraduate STEM Education: Hispanic-Serving Institutions Program (HSI Program) aims to enhance undergraduate STEM education and build capacity at HSIs. Projects supported by the HSI Program will also generate new knowledge on how to achieve these aims. This project at National University will advance the aims of the HSI Program by adding research experiences to undergraduate biology courses. Through a collaboration with the Scripps Institution of Oceanography, this project incorporates course-based undergraduate research (CURE) biology courses for biology majors and for non-majors. The research topics focuses on plastic pollution in the ocean, particularly the microbial populations attached to floating plastic. The CURE is modular and can be adapted for undergraduate courses of different levels. In addition, a virtual adaptation was implemented during the Covid-19 epidemic lockdown phase. A version of the CURE designed for microbiology courses uses the established Tiny Earth methodology to isolate antibiotic producing bacteria from plastic debris.

Karst Study Using Geophysics at Bracken Bat Cave Preserve​ part of CUREnet:Institutes:Ad-Hoc CURE Institutes:Examples
Evelynn Mitchell, St. Marys University
South Central Texas depends on deep seated aquifers to maintain a water supply for over 5 million people. Much of this water supply is recharged through karst features in the Texas Hill Country. Understanding the features on a property helps determine the appropriate level of development, but geophysical methods have limitations on interpreting feature size. Students in this project built on previous work to examine the error of two common geophysical methods when detecting humanly accessible shallow karst features. They gained skills in site analysis using spatial software and high-resolution GPS collection, field work planning, data collection and analysis.