ERP Peak Detective: Introduction to Event-Related Potential Analysis with MATLAB part of Teaching Computation with MATLAB:Past Workshops:MATLAB Workshop 2025:Activities
This scaffolded laboratory activity introduces students with minimal programming experience to Event-Related Potential (ERP) analysis using MATLAB. Students progress from interactive visual exploration of neural ...

Paleoclimate and Ocean Biogeochemistry part of Project EDDIE:Teaching Materials:Modules
This module guides students through an examination of how surface ocean productivity relates to global climate on glacial-interglacial timescales and how the availability of ocean nutrients can be correlated with ...

Lake Mixing Module part of Project EDDIE:Teaching Materials:Modules
Stratified lakes exhibit vertical gradients in organisms, nutrients, and oxygen, which have important implications for ecosystem structure and functioning. Mixing disrupts these gradients by redistributing these ...

Wind and Ocean Ecosystems part of Project EDDIE:Teaching Materials:Modules
Wind has a fundamental impact on ocean ecosystems. Wind drives physical processes, including current development and upwelling through Ekman transport. These physical processes, in turn, have cascading impacts on ...

Using Ecological Forecasts to Guide Decision Making part of Project EDDIE:Teaching Materials:Modules
Because of increased variability in populations, communities, and ecosystems due to land use and climate change, there is a pressing need to know the future state of ecological systems across space and time. ...

Module 5 Human Dimensions in the Poles part of Oceans in the News:Oceans in the News – Polar Ocean Science, Data, and the Media
This unit covers the concept of bioaccumulation of contaminants in a food web, all the way up to humans. Students learn about what constitutes a contaminant, how contaminants can accumulate in an organism and move ...

Nutrient Loading Module part of Project EDDIE:Teaching Materials:Modules
Estimating nutrient loads is a critical concept for students studying water quality in a variety of environmental settings. Many STEM/Environmental science students will be asked to assess the impacts of a proposed anthropogenic activities on human water resources and/or ecosystems as part of their future careers. This module engages students in exploring factors contributing to the actual loads of nitrogen that are transmitted down streams. Nitrogen is a key water quality contaminant contributing to surface water quality issues in fresh, salt, and estuarine environments. Students will utilize real-time nitrate data from the US Geological Survey to calculate nitrate loads for several locations and investigate the interplay of concentration and discharge that contributes to calculated loads.

Module 4 Polar Ecosystems part of Oceans in the News:Oceans in the News – Polar Ocean Science, Data, and the Media
This module follows logically from the previous and gives a biological context to sea ice. Students will review knowledge about seasonal trends in sea ice and learn how this impacts organisms that live in polar ...

An Arabidopsis Mutant Screen CURE for a Cell and Molecular Biology Laboratory Course part of CUREnet:CURE Collection
This CURE is designed from a crucial component of a chloroplast lipid signaling research project and has been implemented for a cell and molecular biology laboratory course at Michigan State University. The research laboratory generated an engineered plant line producing a lipid-derived plant hormone and mutagenized this line. The research question is "what transporters or receptors are involved in the hormone signaling transduction or perception processes?". Students form research hypotheses based on the research model, design experiments, perform experiments, collect and analyze data, make scientific arguments, and share their findings with the learning community. Specifically, the students culture the mutagenized plant population and select the desired mutant phenotypes, followed by genotyping the mutants and characterizing the mutants by basic biochemical approaches. Mathematics is also integrated into the course design. As the students studied the relevant genetic, molecular and biochemical concepts during this CURE, they use the core idea of information flow and data they generate in the lab to make claims about their mutant plants and support these claims with evidence and reasoning.

Nutrient Monitoring in the Chesapeake Bay part of Project EDDIE:Teaching Materials:Modules
The Chesapeake Bay waters receive input from rivers and streams from areas of Washington D.C, Maryland, Delaware, Virginia, West Virginia, and some parts of New York and Pennsylvania. Historically, humongous ...

Characterizing the Aging Process Using Caenorhabditis elegans and Reverse Genetics part of CUREnet:Institutes:Community College of Rhode island:Examples
Using gene silencing (RNAi) in the nemotode C. elegans, students will identify genetic modifiers of proteins with roles in aging by reverse genetics. Specifically, students will analyze the effect of knocking down genes on the level of aging-related proteins tagged with fluorophores (GFP, RFP, etc.). Each group of students will use function-specific RNAi libraries (transcription factors, kinases, etc) already established in our lab. Furthermore, students will evaluate the effect of genetic modifiers on proteostasis and lifespan. In addition to becoming familiar with C. elegans work and appreciating the use of model organisms, the students will master microscopy, genetic crosses, gene silencing, and molecular and biochemical readout assays such as qPCR and immunoblotting.

Assessing the Risk of Invasive Species Using Community Science Data part of Project EDDIE:Teaching Materials:Modules
This module introduces students who are already familiar with GIS to doing comparative analyses with large-scale community science (often called citizen science) data sets. Students will explore how we can use ...

Water Quality Module part of Project EDDIE:Teaching Materials:Modules
Water quality is a critical concept for undergraduate students studying Earth Sciences, Biology, and Environmental Sciences. Many of these students will be asked to assess the impacts of a proposed anthropogenic ...

Capstone Project Stage 1 part of Future of Food
The goal of the Future Food Scenarios capstone project is for the students to investigate the food systems in a particular region in depth, and in particular to identify the current situation, determine the ...

Tidepooling Field trip (online) part of Cutting Edge:Enhance Your Teaching:Teaching with Online Field Experiences:Activities
Tidepooling Field Trip online (developed for remote learning during COVID-19 pandemic); students will watch video and review photos to simulate a field experience as they explore Pillar Point tidepools (as they ...

Put out the Fire! Exploring the Effects of Fire-Fighting Foams on Microorganisms using Statistics and Plots part of Teaching Computation with MATLAB:Past Workshops:MATLAB Workshop 2020:Activities
Objective Analyze a subset of data from a published research paper using MATLAB. This will focus on data manipulation in MATLAB, including reading in text files, for, if, and while statements, statistics, and plot ...

Design2Data part of CUREnet:Institutes:Other Institutes (2019-2020):Examples
The D2D program is centered around an undergraduate-friendly protocol workflow that follows the design-build-test-learn engineering framework. This protocol has served as the scaffold for a successful undergraduate training program and has been further developed into courses that range from a 10-week freshman seminar to a year-long, upper-division molecular biology course. The overarching research goal of this CURE probes the current predictive limitations of protein-modeling software by functionally characterizing single amino acid mutants in a robust model system. The most interesting outcomes of this project are dependent on large datasets, and, as such, the project is optimal for multi-institutional collaborations.

Climate Drivers of Phenology part of Project EDDIE:Teaching Materials:Modules
Many species' life cycles are strongly influenced by temperature, but other cues, like day length and precipitation, can also trigger life cycle changes. Phenology is a way of recording the time when events, ...

Procrustes Skull Analysis part of Teaching Computation with MATLAB:Past Workshops:MATLAB Workshop October 2022:Activities
Procrustes analysis is a form of statistical shape analysis used to analyze the distribution of a set of shapes. The goal of this assignment is to compare different skull types to a reference skull to determine ...

Don't move a mussel: Environmental DNA (eDNA) analysis for detecting aquatic invasive species part of Curriculum for the Bioregion:Activities
Students will learn field sampling and laboratory techniques to utilize environmental DNA (eDNA) as an early detection tool for invasive or rare species, with a focus on zebra mussels.