The Paleobiology Database: Diversity and Extinction in the Phanerozoic (as viewed through the eyes of a bivalve)
Initial Publication Date: June 2, 2014
Summary
A key question in paleobiology is how diversity, origination, and extinction have changed over time. Given that species are missing from the fossil record this is hard to determine directly. However, we can measure how fossil diversity has changed over time, in the hope that the pattern of diversity change seen in the fossil record accurately reflects the pattern of true diversity change. One problem that arises with this approach is that the way that we count our fossil taxa can change our view of the diversity of life through time, so in this lab we will use the Paleobiology Database to play around with a few different methods of data analyses to get at a picture of "true" biodiversity. In addition, we will examine the effects of mass extinctions on bivalves at different taxonomic levels.
Context
Audience
I use this in a 200-level undergraduate Paleobiology course. The course is mostly majors, though students come from a wide variety of backgrounds.
Skills and concepts that students must have mastered
Some knowledge of paleontology, especially relating to diversity.
Some knowledge of bivalves
Basic Excel skills
Paleobiology Database basics -- these are covered in youtube videos, links to which are included in the lab PDF.
Some knowledge of bivalves
Basic Excel skills
Paleobiology Database basics -- these are covered in youtube videos, links to which are included in the lab PDF.
How the activity is situated in the course
I use this lab at the end of a unit on diversity and extinction, about 2/3rds of the way through the semester.
Goals
Content/concepts goals for this activity
How to download data from PBDB.
How to create diversity curves and range charts in a spreadsheet program.
How to analyze different ways of measuring and counting diversity
To learn how to make diversity curves using raw data.
How to create diversity curves and range charts in a spreadsheet program.
How to analyze different ways of measuring and counting diversity
To learn how to make diversity curves using raw data.
Higher order thinking skills goals for this activity
Students demonstrate for themselves that how we count our fossil taxa can change our view of the diversity of organisms through time.
Students examine and interpret long term trends in extinction and origination at various taxonomic levels.
Students examine and interpret long term trends in extinction and origination at various taxonomic levels.
Other skills goals for this activity
How to download data from PBDB.
How to create diversity curves and range charts in a spreadsheet program.
How to create diversity curves and range charts in a spreadsheet program.
Description and Teaching Materials
Lab exercise (Acrobat (PDF) 2.5MB Oct22 18)
Excel spreadsheet for Step 3 (Excel 2007 (.xlsx) 51kB May30 14)
Teaching Notes and Tips
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