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Exploring Genomics Data
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Bioinformatics Resources and Tools part of Exploring Genomics Data:Chamaecrista
Bioinformatics Resources and Tools
A database is a structured collection of records stored in a computer system. Genomic databases typically store DNA or protein sequences as well as annotated ...
Vocabulary part of Exploring Genomics Data:Aiptasia
Vocabulary/Jargon of Genomics and Bioinformatics
Wikipedia contains very useful descriptions of many genomics terms
for example check out Wikipedia's definition for ...
Candidate genes part of Exploring Genomics Data:Chamaecrista
Candidate genesYou may be intrigued by a gene, gene family, or set of genes you've learned about in another species. One approach to genome exploration is to hunt for genes that have DNA or ...
Finding SNPs with lots of variation part of Exploring Genomics Data:Chamaecrista
Finding SNPs with lots of variationStrategy for identify SNPs with lots of variation among ecotypes
The approach that seems to work well for more than two ecotypes is to compute the product of ...
Primer Design part of Exploring Genomics Data:Chamaecrista
Primer DesignThese resources will help you design primers for your functional genomics experiment.
Resources for designing primers
Oligo Calc: Oligonucleotide Properties Calculator
Click here for ...
Timeline and Benchmarks part of Exploring Genomics Data:Chamaecrista
Timeline and Benchmarks
Overview of your term long research on flowering in Chamaecrista
Check back weekly for updates
Assignments
Lab Syllabus for Winter 2011 (Microsoft Word 26kB Jan9 11)
...
Exploring Genomics Data part of Exploring Genomics Data
The Genomics Explorers provide an iterative way for students to choose strategies for asking and addressing biologically interesting questions using a range of genomics tools. Select which Explorer you wish to ...
Timeline/Benchmarks part of Exploring Genomics Data:Aiptasia
Genomics Research: Timeline and Benchmarks
The goal of this project is to have you do independent research exploring a question that reflects your own interests. Moving a scientific research ...
A case study: candidate genes part of Exploring Genomics Data:Aiptasia
A case study: candidate genesempty
Developing A Research Question: A Case Study
The ability to develop research questions and hypotheses are not intuitive skills! It requires practice. The following ...
Genome Assembly part of Exploring Genomics Data:Aiptasia
Whole Genome Data
This section is awaiting the arrival of genome sequence data from Cofactor Genomics
Transcriptome sequencing allows biologists to get a quick, but incomplete, inventory of the ...