Resequencing of Commercial Microorganisms
Jessica Kaufman, Endicott College
Students choose a probiotic pill or product with labeling that indicates the species and strain of bacteria in the product. Products are chosen so that a high quality reference genome sequence is available on NCBI. After DNA isolation and library preparation, high-quality student samples are pooled for next-gen sequencing on an Illumina MiSeq. The following semester, students in the required bioinformatics course will analyze the FASTQ files from the NGS run with a simple variant call workflow on usegalaxy.org. Then, each student will use a R Shiny app developed for this CURE to convert the VCF output from Galaxy to a FASTA file for an assigned gene in the resequenced genome. Students will complete their research experience by submitting the FASTA file to the NCBI Nucleotide Database.

Characterizing the Aging Process Using Caenorhabditis elegans and Reverse Genetics
Joslyn Mills, Brown University
Using gene silencing (RNAi) in the nemotode C. elegans, students will identify genetic modifiers of proteins with roles in aging by reverse genetics. Specifically, students will analyze the effect of knocking down genes on the level of aging-related proteins tagged with fluorophores (GFP, RFP, etc.). Each group of students will use function-specific RNAi libraries (transcription factors, kinases, etc) already established in our lab. Furthermore, students will evaluate the effect of genetic modifiers on proteostasis and lifespan. In addition to becoming familiar with C. elegans work and appreciating the use of model organisms, the students will master microscopy, genetic crosses, gene silencing, and molecular and biochemical readout assays such as qPCR and immunoblotting.

The Effect of Silver Nanoparticles on Plant Growth and Herbivory
Erin Rehrig, Fitchburg State University
In this CURE, students will conduct experiments to determine the effects of silver nanoparticles on plant growth and insect herbivory. Students will synthesize their own nanoparticles and treat Arabididopsis plants with them. After 5 weeks, insects (Pieris rapae, caterpillars) will be placed on plants and insect herbivory will be assessed across treatments. Insects will be weighted before and after feeding assays. Plant growth rates and insect herbivory measurements will be done using digital photography and image analysis using MathLab.

Spicing things up: Implementation of a CURE to investigate the antimicrobial properties of spices on six bacterial species
Heather Townsend, Community College of Rhode Island
I issue students six bacterial species for use. I have students start the semester understanding primary literature and how to find sources, plagiarism, and how to use citations. They must then pick a spice (one per group) using literature, meaning they have to research that a particular spice has been shown to have antimicrobial properties. Once selected they do a series of dilutions and finally test the dilutions on the six bacterial species. All groups must use the entire class data in their discussion along with the historical data from previous semesters. They end in designing a poster which they finally present at a poster presentation open to the college.

Population Biology of the Gulls of Appledore
Sarah Courchesne, Northern Essex Community College
For more than 10 years, data has been collected on the breeding population of herring and great black-backed gulls on Appledore Island in Maine. The resulting dataset is massive, including morphometrics, family histories, breeding success, total population, and many other parameters. While a small number of students are able to visit the island each year to assist in data collection and sampling, this CURE democratizes biology research, and invites an entire classroom of students to investigate their own questions. Students will process the most recent set of samples collected the previous summer, performing DNA sexing and blood smear analysis, and will additionally pursue their own research questions regarding either the existing data, the samples, or both.

Cell Biology of Tetrahymena thermophila Mutants
Carolyn Wetzel, Holyoke Community College
Tetrahymena thermophila is a widely used model system for studying eukaryotic cell biology. In collaboration with a lead researcher at a different institution, students in this CURE will characterize mutants of Tetrahymena to screen for possible effects of different mutations on basic cell functions such as cell morphology, cilia action, phagocytosis, growth and development, energetics, and response to different stimuli. Student results will be sent to the lead researcher to be incorporated into their larger project and it is expected that any significant student contribution will lead to authorship or acknowledgement in a publication.

Biochemistry of Crithidia fasciculata
Amy Greene, Albright College
Students in my second-semester biochemistry lab will study the biochemistry of the flagellated parasite Crithidia fasciculata. Students in Paul Ulrich's CURE at Georgia State generate C. fasciculata cell lines overexpressing putatively mitochondrial proteins with GFP tags. The goal of my CURE is for students to design experiments study the biochemistry of these cell lines, giving us more information about the structure and function of mitochondrial proteins in this poorly-studied parasite.

Evaluating Water Quality in the Elizabeth River (Eastern Branch) at Norfolk, VA
Joe D'Silva, Norfolk State University
The eastern branch of the Elizabeth River is located two miles south of Norfolk State University campus. Effluents from a ship repair site are discharged into the river. The water is polluted with oil. The quality of water below and above the shipyard needs to be investigated since the river is also home to fish, oysters, jelly fish. The research will assess the health of the river with regard to its physical properties and levels of chemical.

Lexical density and diversity in people using augmented communication
Kay Chen, SUNY College at Fredonia
For this assignment, students are to form small groups (3 persons) and experience the process of conducting a group-design study from the initial study design and preparation, data collection, data analysis, and result interpretation.

Prooxidant effects on C. elegans
Joshua Gray, United States Coast Guard Academy
Students assess the effect of novel prooxidant or redox cycling compounds on C. elegans. Over the first five laboratory periods, students learned culturing methods for C. elegans and several experimental techniques such as LD50, lifespan, chemotaxis, rigor mortis, and quantitative real-time RT-PCR assays, while developing a novel research hypothesis focused regarding the mechanism of action of their compound. After peer reviewed proposal presentations, students spend subsequent weeks designing and performing experiments, trouble-shooting difficulties they encountered with their peers, researching and applying additional experimental techniques from the literature, and reporting their findings each week at the beginning of each lab period, mimicking a lab meeting format. The final presentation highlights outcomes from the semester and proposed plans for future experiments.