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    Teaching Genomics at Small Colleges

  • Genomics Instructional Units Minicollection 11 matches

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Expression of gerontogenes in neurons: A comparative genomic approach to studying the role of the nervous system in lifespan/aging part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
This multi-week laboratory module is appropriate for an intermediate-level neuroscience and behavior course. Students design behavioral experiments in wildtype and mutant C. elegans with defects in neurally-expressed genes implicated in aging. Students then use bioinformatic and comparative genomic tools to explore orthologous genes in at least ten different animal taxa.

Using Metagenomics to Investigate Microbial Diversity part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
Using Winogradsky columns, a soil enrichment culture, students explore microbial diversity through metagenomics. The Winogradsky column is a complex community of interacting microorganisms. In a community such as ...

Phylogenetic analysis of the bony fishes: Morphological and mtDNA sequence comparisons part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
This three-four week inquiry-based module is designed to teach students basic concepts, quandaries, and methodology of phylogenetics in a format that integrates wet-lab, bioinformatics, and lecture/discussion.

Behavior, Neuroanatomy, Genomics: what can we learn from mouse mutants? part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
In this sequence of labs students will be provided a mutant mouse with an unspecified motor mutation and its wild-type control. The goal of this sequence is to identify and characterize the mutant using behavior, neuroanatomy and genomics.

Integrative activities to study the evolution of nervous system function part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
The overall goal of this multi-week inquiry-based project is to have students combine levels of analysis, including behavioral, anatomical, cell biological, molecular and genomics tools to study how specialized functions of the nervous system evolved.

Constructing and using a PAM style scoring matrix part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection

Local Population Structure and Behavior of the Wood Frog, Rana sylvatica part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
Assess population structure, genetic health, and behavior of your local wood frog population by determining microsatellite allele frequencies.

Exploring the Chamaecrista Gene Space part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection

Reconstructing the Evolution of Cauliflower and Broccoli part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
This laboratory exercise focuses on the connections between plant genetics and morphology.

Comparison of Protein Sequences: BLAST searching and Phylogenetic Tree Construction part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
This laboratory exercise is a guided discovery of computational methods for comparing protein sequences. Students perform BLAST searches of reported CYP1A sequences and construct phylogenetic trees using CYP1A amino acid sequences from various vertebrate species, especially those with multiple CYP1A paralogs.

Human Single Nucleotide Polymorphism Determination part of Teaching Genomics at Small Colleges:Genomics Instructional Units Minicollection
In this laboratory exercise, students determine which allelic form of a particular single nucleotide polymorphism (SNP) they have (one located in an intron, and not associated with any known phenotype). Students ...