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Modeling
Ranyee Chiang Presentation on Modeling (PowerPoint 7.9MB Jul20 08)ModBase Database of Protein Structures
Internet Resources
- Chimera, a molecular visualization tool
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links
Seminal Papers
- Sippl, M. J. Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. J Mol Biol 213, 859-83 (1990).
- Ponder JW, Richards FM. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.J Mol Biol. 1987 Feb 20;193(4):775-91.
- Sali, A. and Blundell, T.L., Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 1993. 234: p. 779-815.
- A method to identify protein sequences that fold into a known threedimensional structure. J. U. Bowie, R. Luthy, D. Eisenberg. Science 253(5016): 164-70
